Index

C

communication_flow() (in module metachat.tl) communication_group() (in module metachat.tl) communication_group_spatial() (in module metachat.tl) communication_responseGenes() (in module metachat.tl)

communication_responseGenes_cluster() (in module metachat.tl) communication_responseGenes_keggEnrich() (in module metachat.tl) compute_costDistance() (in module metachat.pp) compute_direction_histogram_per_pair() (in module metachat.tl)

G

generate_adata_met_compass() (in module metachat.pp) generate_adata_met_mebocost() (in module metachat.pp)

generate_adata_met_scFEA() (in module metachat.pp) global_intensity_scaling() (in module metachat.pp)

L

load_barrier_segments() (in module metachat.pp) LRC_cluster() (in module metachat.pp)

LRC_filtered() (in module metachat.pp) LRC_unfiltered() (in module metachat.pp)

M

metabolic_communication() (in module metachat.tl) metachat module metachat.pl module metachat.pp module

metachat.tl module MetaChatDB() (in module metachat.pp) module metachat metachat.pl metachat.pp metachat.tl

P

plot_3d_feature() (in module metachat.pl) plot_3d_LRC_with_two_slices() (in module metachat.pl) plot_communication_flow() (in module metachat.pl) plot_communication_responseGenes() (in module metachat.pl) plot_communication_responseGenes_keggEnrich() (in module metachat.pl) plot_DEG_volcano() (in module metachat.pl) plot_direction_similarity() (in module metachat.pl) plot_dis_thr() (in module metachat.pl)

plot_graph_connectivity() (in module metachat.pl) plot_group_communication_chord() (in module metachat.pl) plot_group_communication_compare_hierarchy_diagram() (in module metachat.pl) plot_group_communication_heatmap() (in module metachat.pl) plot_LRC_markers() (in module metachat.pl) plot_metapathway_pair_contribution_bubbleplot() (in module metachat.pl) plot_MSpair_contribute_group() (in module metachat.pl) plot_spot_distance() (in module metachat.pl) plot_summary_pathway() (in module metachat.pl)

S

summary_communication() (in module metachat.tl)

summary_pathway() (in module metachat.tl)