metachat.tl.communication_responseGenes_keggEnrich

metachat.tl.communication_responseGenes_keggEnrich(gene_list=None, gene_sets='KEGG_2021_Human', organism='Human')[source]

Function for performing KEGG enrichment analysis on a given list of response genes.

Parameters

gene_list: A list of genes to be analyzed for enrichment. Default is None.
gene_sets: The gene set database to use for enrichment analysis. Default is “KEGG_2021_Human”. For mouse, use ‘KEGG_2019_Mouse’.
organism: The organism for which the gene sets are defined. Default is “Human”. For mouse, use ‘Mouse’.

Returns

df_resultpandas.DataFrame: A DataFrame containing the results of the enrichment analysis.